Publications
2024
2024
Subtractive proteomics unravel the potency of D-Alanine-D-Alanine Ligase as the drug target for Burkholderia pseudomallei.Rahman, S., Bhattacharya, A., Jana, P., Ganguly, M., Das, A. K., Hazra, D., & Roychowdhury, A. (2024). Subtractive proteomics unravel the potency of D-Alanine-D-Alanine Ligase as the drug target for Burkholderia pseudomallei. BioRxiv, 2024.10.15.618487. https://doi.org/10.1101/2024.10.15.618487
Designing a novel Scaffold-Based Multi-Epitope Vaccine to Combat Melioidosis Caused by Burkholderia pseudomallei: An In-silico and Immunoinformatics approach.Rahman, S., Das, A., Das, A. K., Hazra, D., & Roychowdhury, A. (2024). Designing a novel Scaffold-Based Multi-Epitope Vaccine to Combat Melioidosis Caused by Burkholderia pseudomallei: An In-silico and Immunoinformatics approach. BioRxiv, 2024.06.18.599592. https://doi.org/10.1101/2024.06.18.599592
Designing a Novel 3D Scaffold for Multiepitope Vaccine Development: Engineering Ag85a Protein for Enhanced Stability and Antigenicity.Mondal, T., Rahman, S., Das, A. K., Hazra, D., & Roychowdhury, A. (2024). Designing a Novel 3D Scaffold for Multiepitope Vaccine Development: Engineering Ag85a Protein for Enhanced Stability and Antigenicity. BioRxiv, 2024.03.20.585912. https://doi.org/10.1101/2024.03.20.585912
2023
2023
Staphylococcal superantigen-like protein 10 enhances the amyloidogenic biofilm formation in Staphylococcus aureus.Rahman, S., Das, A.K. Staphylococcal superantigen-like protein 10 enhances the amyloidogenic biofilm formation in Staphylococcus aureus. BMC Microbiol 23, 390 (2023). https://doi.org/10.1186/s12866-023-03134-y
Putative staphylococcal enterotoxin possesses two common structural motifs for MHC-II binding.
Rahman, S., Saha, S., Dasgupta, S. B., & Das, A. K. (2024). Putative staphylococcal enterotoxin possesses two common structural motifs for MHC-II binding. International Journal of Biological Macromolecules, 256, 128437. https://doi.org/10.1016/j.ijbiomac.2023.128437
Targeting Staphylococcal Cell–Wall Biosynthesis Protein FemX Through Steered Molecular Dynamics and Drug-Repurposing Approach.Rahman, S., Nath, S., Mohan, U., & Das, A. K. (2023). Targeting Staphylococcal Cell–Wall Biosynthesis Protein FemX Through Steered Molecular Dynamics and Drug-Repurposing Approach. ACS Omega, 8(32), 29292–29301. https://doi.org/10.1021/acsomega.3c02691
Exploring Staphylococcal Superantigens To Design A Potential Multi-Epitope Vaccine Against Staphylococcus aureus: An in-silico Reverse Vaccinology Approach.Rahman, S., Sarkar, K., & Das, A. K. (2023). Exploring staphylococcal superantigens to design a potential multi-epitope vaccine against Staphylococcus aureus: an in-silico reverse vaccinology approach. Journal of Biomolecular Structure and Dynamics, 41(22), 13098–13112. https://doi.org/10.1080/07391102.2023.2171138
2022
2022
A subtractive proteomics and immunoinformatics approach towards designing a potential multi-epitope vaccine against pathogenic Listeria monocytogenes.Rahman, S., & Das, A. K. (2022). A subtractive proteomics and immunoinformatics approach towards designing a potential multi-epitope vaccine against pathogenic Listeria monocytogenes. Microbial Pathogenesis, 172, 105782. https://doi.org/10.1016/j.micpath.2022.105782
Identification of potential inhibitors against FemX of Staphylococcus aureus: A hierarchial in-silico drug repurposing approach.Rahman, S., Rajak, K., Mishra, S., & Das, A. K. (2022). Identification of potential inhibitors against FemX of Staphylococcus aureus: A hierarchial in-silico drug repurposing approach. Journal of Molecular Graphics and Modelling, 115, 108215. https://doi.org/10.1016/j.jmgm.2022.108215
2021
2021
Integrated Multi-omics, Virtual Screening and Molecular Docking Analysis of Methicillin-Resistant Staphylococcus aureus USA300 for the Identification of Potential Therapeutic Targets: An In-Silico Approach.Rahman, S., & Das, A. K. (2021). Integrated Multi-omics, Virtual Screening and Molecular Docking Analysis of Methicillin-Resistant Staphylococcus aureus USA300 for the Identification of Potential Therapeutic Targets: An In-Silico Approach. International Journal of Peptide Research and Therapeutics, 27(4), 2735–2755. https://doi.org/10.1007/s10989-021-10287-9
Label-Free Method Development for Hydroxyproline PTM Mapping in Human Plasma Proteome.Dutta, D., Rahman, S., Bhattacharje, G., Bag, S., Sing, B. C., Chatterjee, J., Basak, A., & Das, A. K. (2021). Label-Free Method Development for Hydroxyproline PTM Mapping in Human Plasma Proteome. The Protein Journal, 40(5), 741–755. https://doi.org/10.1007/s10930-021-09984-7